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Schema module documentation

~ / doc / schema-1 / characters / continuous

— Last updated: Tue Sep 23 12:49:28 IST 2014

Description

This module defines concrete subclasses for the abstract character matrix components that all character matrices must implement. The subclasses defined here apply to continuous-valued character data, such as length or width measurements. In a verbose notation, this data is represented as the "state" attribute of the <cell> element. In a compact notation, the same data is represented as a sequence of space-separated doubles.

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Complex types

ContinuousCells

Description

A continuous characters block consisting of granular cells preceded by metadata.

Inheritance

ContinuousCells restricts AbstractCells.

Substructures

an element called "meta", instance of Meta (0..unbounded).
an element called "format", instance of ContinuousFormat (1..1).
an element called "matrix", instance of ContinuousObsMatrix (1..1).

Definition source

  <xs:complexType abstract="false" name="ContinuousCells">
    <xs:complexContent>
      <xs:restriction base="AbstractCells">
        <xs:sequence maxOccurs="1" minOccurs="1">
          <xs:element maxOccurs="unbounded" minOccurs="0" name="meta" type="Meta"/>
          <xs:element maxOccurs="1" minOccurs="1" name="format" type="ContinuousFormat"/>
          <xs:element maxOccurs="1" minOccurs="1" name="matrix" type="ContinuousObsMatrix"/>
        </xs:sequence>
      </xs:restriction>
    </xs:complexContent>
  </xs:complexType>

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ContinuousChar

Description

A concrete implementation of the char element, which requires only an id attribute.

Inheritance

ContinuousChar restricts AbstractChar.

Attributes

Name	Type	Usage
states	xs:IDREF	prohibited
codon	CodonPosition	prohibited
tokens	MSTokenLength	prohibited

Substructures

an element called "meta", instance of Meta (0..unbounded).

Definition source

  <xs:complexType name="ContinuousChar" sawsdl:modelReference="http://evolutionaryontology-dev.nescent.org/cdao.owl#ContinuousCharacter">
    <xs:complexContent>
      <xs:restriction base="AbstractChar">
        <xs:sequence maxOccurs="1" minOccurs="1">
          <xs:element maxOccurs="unbounded" minOccurs="0" name="meta" type="Meta"/>
        </xs:sequence>
        <xs:attribute name="states" type="xs:IDREF" use="prohibited"/>
        <xs:attribute name="codon" type="CodonPosition" use="prohibited"/>
        <xs:attribute name="tokens" type="MSTokenLength" use="prohibited"/>
      </xs:restriction>
    </xs:complexContent>
  </xs:complexType>

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ContinuousFormat

Description

The ContinuousFormat class is the container of continuous column definitions.

Inheritance

ContinuousFormat restricts AbstractFormat.

Substructures

an element called "char", instance of ContinuousChar (1..unbounded).
an element called "set", instance of CharSet (0..unbounded).

Definition source

  <xs:complexType abstract="false" name="ContinuousFormat">
    <xs:complexContent>
      <xs:restriction base="AbstractFormat">
        <xs:sequence maxOccurs="1" minOccurs="1">
          <xs:element maxOccurs="unbounded" minOccurs="1" name="char" type="ContinuousChar"/>
          <xs:element maxOccurs="unbounded" minOccurs="0" name="set" type="CharSet"/>
        </xs:sequence>
      </xs:restriction>
    </xs:complexContent>
  </xs:complexType>

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ContinuousMatrixObsRow

Description

This is a row in a matrix of continuous data as granular obervations.

Inheritance

ContinuousMatrixObsRow restricts AbstractObsRow.

Substructures

an element called "meta", instance of Meta (0..unbounded).
an element called "cell", instance of ContinuousObs (1..unbounded).
an element called "set", instance of CellSet (0..unbounded).

Definition source

  <xs:complexType abstract="false" name="ContinuousMatrixObsRow">
    <xs:complexContent>
      <xs:restriction base="AbstractObsRow">
        <xs:sequence maxOccurs="1" minOccurs="1">
          <xs:element maxOccurs="unbounded" minOccurs="0" name="meta" type="Meta"/>
          <xs:element maxOccurs="unbounded" minOccurs="1" name="cell" type="ContinuousObs"/>
          <xs:element maxOccurs="unbounded" minOccurs="0" name="set" type="CellSet"/>
        </xs:sequence>
      </xs:restriction>
    </xs:complexContent>
  </xs:complexType>

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ContinuousMatrixSeqRow

Description

This is a row in a matrix of continuous data as character sequences.

Inheritance

ContinuousMatrixSeqRow restricts AbstractSeqRow.

Substructures

an element called "meta", instance of Meta (0..unbounded).
an element called "seq", instance of ContinuousSeq (1..1).

Definition source

  <xs:complexType abstract="false" name="ContinuousMatrixSeqRow">
    <xs:complexContent>
      <xs:restriction base="AbstractSeqRow">
        <xs:sequence maxOccurs="1" minOccurs="1">
          <xs:element maxOccurs="unbounded" minOccurs="0" name="meta" type="Meta"/>
          <xs:element maxOccurs="1" minOccurs="1" name="seq" type="ContinuousSeq"/>
        </xs:sequence>
      </xs:restriction>
    </xs:complexContent>
  </xs:complexType>

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ContinuousObs

Description

This is a single cell in a matrix containing a continuous observation.

Inheritance

ContinuousObs restricts AbstractObs.

Attributes

Name	Type	Usage
char	xs:IDREF	required
state	ContinuousToken	required

Substructures

an element called "meta", instance of Meta (0..unbounded).

Definition source

  <xs:complexType abstract="false" name="ContinuousObs" sawsdl:modelReference="http://evolutionaryontology-dev.nescent.org/cdao.owl#ContinuousStateDatum">
    <xs:complexContent>
      <xs:restriction base="AbstractObs">
        <xs:sequence maxOccurs="1" minOccurs="1">
          <xs:element maxOccurs="unbounded" minOccurs="0" name="meta" type="Meta"/>
        </xs:sequence>
        <xs:attribute name="char" type="xs:IDREF" use="required"/>
        <xs:attribute name="state" type="ContinuousToken" use="required"/>
      </xs:restriction>
    </xs:complexContent>
  </xs:complexType>

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ContinuousObsMatrix

Description

A matrix of rows with single character observations.

Inheritance

ContinuousObsMatrix restricts AbstractObsMatrix.

Substructures

an element called "row", instance of ContinuousMatrixObsRow (1..unbounded).
an element called "set", instance of RowSet (0..unbounded).

Definition source

  <xs:complexType abstract="false" name="ContinuousObsMatrix">
    <xs:complexContent>
      <xs:restriction base="AbstractObsMatrix">
        <xs:sequence maxOccurs="1" minOccurs="1">
          <xs:element maxOccurs="unbounded" minOccurs="1" name="row" type="ContinuousMatrixObsRow"/>
          <xs:element maxOccurs="unbounded" minOccurs="0" name="set" type="RowSet"/>
        </xs:sequence>
      </xs:restriction>
    </xs:complexContent>
  </xs:complexType>

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ContinuousSeqMatrix

Description

A matrix of rows with seq strings of type continuous.

Inheritance

ContinuousSeqMatrix restricts AbstractSeqMatrix.

Substructures

an element called "row", instance of ContinuousMatrixSeqRow (1..unbounded).
an element called "set", instance of RowSet (0..unbounded).

Definition source

  <xs:complexType abstract="false" name="ContinuousSeqMatrix">
    <xs:complexContent>
      <xs:restriction base="AbstractSeqMatrix">
        <xs:sequence maxOccurs="1" minOccurs="1">
          <xs:element maxOccurs="unbounded" minOccurs="1" name="row" type="ContinuousMatrixSeqRow"/>
          <xs:element maxOccurs="unbounded" minOccurs="0" name="set" type="RowSet"/>
        </xs:sequence>
      </xs:restriction>
    </xs:complexContent>
  </xs:complexType>

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ContinuousSeqs

Description

A continuous characters block consisting of float sequences preceded by metadata.

Inheritance

ContinuousSeqs restricts AbstractSeqs.

Substructures

an element called "meta", instance of Meta (0..unbounded).
an element called "format", instance of ContinuousFormat (1..1).
an element called "matrix", instance of ContinuousSeqMatrix (1..1).

Definition source

  <xs:complexType abstract="false" name="ContinuousSeqs">
    <xs:complexContent>
      <xs:restriction base="AbstractSeqs">
        <xs:sequence maxOccurs="1" minOccurs="1">
          <xs:element maxOccurs="unbounded" minOccurs="0" name="meta" type="Meta"/>
          <xs:element maxOccurs="1" minOccurs="1" name="format" type="ContinuousFormat"/>
          <xs:element maxOccurs="1" minOccurs="1" name="matrix" type="ContinuousSeqMatrix"/>
        </xs:sequence>
      </xs:restriction>
    </xs:complexContent>
  </xs:complexType>

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Simple types

ContinuousSeq

Description

This is a simple type that specifies a list of xs:double characters.

Inheritance

ContinuousSeq restricts AbstractTokenList.

Definition source

  <xs:simpleType name="ContinuousSeq">
    <xs:restriction base="AbstractTokenList"/>
  </xs:simpleType>

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ContinuousToken

Inheritance

ContinuousToken restricts xs:double.

Definition source

  <xs:simpleType name="ContinuousToken">
    <xs:restriction base="xs:double"/>
  </xs:simpleType>

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nexml schema 0.9 ~/nexml/xsd/characters/continuous.xsd

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Schema module documentation

Description

Complex types

ContinuousCells

Description

Inheritance

Substructures

Definition source

ContinuousChar

Description

Inheritance

Attributes

Substructures

Definition source

ContinuousFormat

Description

Inheritance

Substructures

Definition source

ContinuousMatrixObsRow

Description

Inheritance

Substructures

Definition source

ContinuousMatrixSeqRow

Description

Inheritance

Substructures

Definition source

ContinuousObs

Description

Inheritance

Attributes

Substructures

Definition source

ContinuousObsMatrix

Description

Inheritance

Substructures

Definition source

ContinuousSeqMatrix

Description

Inheritance

Substructures

Definition source

ContinuousSeqs

Description

Inheritance

Substructures

Definition source

Simple types

ContinuousSeq

Description

Inheritance

Definition source

ContinuousToken

Inheritance

Definition source

See also

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